Plant MITE

SE2230300

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5023
Zea mays
SE2230300
hAT
Hat3
chr10:139072926-139073635
AGTACGCA
GTACGCATAGAGATGGCAATGGGTAC

Secondary structure and sequence

TSD TIR

5'

3'

  A    GCA                   --  G  --     AA  ----        TTTTTACCCCATTAGGGTACGGGTTTGGGTCAATTTTCATACCCATGGGTTTGTTAACGGGCATAAATCTGTACCCAGCGGGTTTATGGGTACGGGTTTGTTCCTATAGTACCCAAACCCGTGAACCCGTGGGTTTTTTAAACCCGACCAAATCTAGTGCATATTGTCATTTTATTTTATAAACGAACAACAAACTTGTTATTTCTTATTTACTTCATATTTTTTATCAATTGGTGAATGTATCAGTAGTCGGTGAGAGTGTTGCTTGCTTGATATTATAGTTTTTACTAGCGTTATATATGT
   GTAC   TAGAGATGGCAATGGGTAC  CC AA  ACCCG  AC    CCGATGGG                                                                                                                                                                                                                                                                                                               
   ||||   |||||||||||||||||||  || ||  |||||  ||    ||||||||                                                                                                                                                                                                                                                                                                               G
   CATG   ATCTCTACCGTTGCCCATG  TG GG  ACCCA  AA    CAGGGTTT                                                                                                                                                                                                                                                                                                               
ACG    --A                   TT  -  CG     --  ATGG        GGGCATGGGCACTTTTTATAGATACGGGTAATTTTTTGGGCATGGGTACTGCCCAAACTCTAAAACGGGTTTGGGCATGGGTAGCCCAATTGCCCATGGGTACCCAATGGGCGCCCAAAGTAGAGGTTATATGAACAAGAAGAGTATTAGTTATTCATAGCATTACTAATTACTATAGTACTAGGTTTTAGATACATTACTTGTTGCTCAAGTACTAAACCATATTTTTAATAATCGTCTCTCTTACTTTATGTTTATTATTCAACATATTAATTCACTGGAACGTGATTCAATAGGTAGGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230300

AGTACGCATAGAGATGGCAATGGGTACCCGAAACCCGAAACCCGATGGGTTTTTACCCCATTAGGGTACGGGTTTGGGTCAATTTTCATACCCATGGGTTTGTTAACGGGCATAAATCTGTACCCAGCGGGTTTATGGGTACGGGTTTGTTCCTATAGTACCCAAACCCGTGAACCCGTGGGTTTTTTAAACCCGACCAAATCTAGTGCATATTGTCATTTTATTTTATAAACGAACAACAAACTTGTTATTTCTTATTTACTTCATATTTTTTATCAATTGGTGAATGTATCAGTAGTCGGTGAGAGTGTTGCTTGCTTGATATTATAGTTTTTACTAGCGTTATATATGTGGTGGATGGATAACTTAGTGCAAGGTCACTTAATTATACAACTTATTATTTGTATTTCATTCTCTCTGCTAATAATTTTTATACCAAATCATGAACTCGTTGTTCATTACATAGATTTTGGATCATGATATCATTAATCATTACGATACTTATTGATTATGAGAAGAACAAGTATATTGGAGATGAAACCCGCGGGTAACCCATGGGTACCCGTTAACCCGATGGGTACGGGTTTGGGCAAAATCTCAAACCCGTCATGGGTACGGGTTTTTTAATGGGCATAGATATTTTTCACGGGTACGGGTTTGGGACGGTAAAACCCAGCGGGTTTGTACCCGTTGCCATCTCTAAGTACGCA

Copy Cancel