Plant MITE

SE2250307

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5030
Zea mays
SE2250307
PIF/harbinger
To12
chr10:147572326-147572520
TTA
AGGGGGTGTTTGAATGCACTAGAGCTAATAGTTAGTAGCTAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT                                    -A       TTAGT   -AACAT     CACCT    -  ATAGTTCAACTATTAGCTATTTTTG
  AGGGGGTGTTTGAATGCACTAGAGCTAATAGTTAGT  GCTAAAA     TGA      CCAAA     TAGC TA                         
  ||||||||||||||||||||||||||||||||||||  |||||||     |||      |||||     |||| ||                          
  TCCCCCACAAACTTACGTGATCTTGATTATCAATCA  CGATTTT     ACT      TTAAT     CGAT CA                         
AT                                    AC       ---TT   ATCACC     -----    C  TTGTTTATTGATAATTGATTAAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250307

TTAGGGGGTGTTTGAATGCACTAGAGCTAATAGTTAGTAGCTAAAATTAGTTGAAACATCCAAACACCTTAGCTAATAGTTCAACTATTAGCTATTTTTGGCAAATTAGTTAATAGTTATTTGTTACCTAGCTAATTCCACTATCATTTTTTAGCCAACTAACTATTAGTTCTAGTGCATTCAAACACCCCCTTA

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