SE2210313

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5036
  • Zea mays
  • SE2210313
  • Tc1/Mariner
  • St3
  • chr10:109413376-109413638
  • TA
  • TACTCCCTCCGGTTTCCTATTAGTTGTCGTTTAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                A   CAACGACAC    TCCAAAATATAACTTTGACCAATGTTTTTTGTTAAAATACAAATGAACTCTTAATACATTTATACTTTTATAAAAGTACTTTTTAT
TACTCCCTCCGGTTTCCTATTAGTTGTCGTTT GGA         GGTC                                                                                      
|||||||||||||||||||||||||||||||| |||         ||||                                                                                       
ATGAGGGAGGCCAAAGGATAATCAACAGCAAA CCT         TCCA                                                                                      
                                A   -------AT    AGCTCAGTTTGAATATTTTAAAACTGATGTTTATTGATAAAACAATAAATCAAAACCTTGGATTATAAATATACGTGGTTAAATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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