SE2250326

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5049
  • Zea mays
  • SE2250326
  • PIF/harbinger
  • To10
  • chr10:118698531-118698875
  • TAA
  • GGCCTCGTTTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAA   CTC           GGGACTAAAGATTAGTCCCTTTATTTTAGTCTCATTTAGTCTATAAATTGCCAAACGGTGGGACTAAAATAGGGACTAAACTGCTTTAGTCTCTAGTCCCTCAAAGGGTGACTAAAAGTGACTAAACCATATTAATTTTACTTTTTGTCCCT
    GGC   GTTTGGTTTGA                                                                                                                                                        
    |||   |||||||||||                                                                                                                                                        C
    CCG   CAAACCAAGGA                                                                                                                                                        
AATC   -TA           AATCAAATCCCTAATTTCAAATCAATCCTCTGAAAATCAGTGATGGGATAAATCAACATCCTTGATTTTTATAAGTTTCGTGTAATTTACTTAGTATTCTTCTGGTTTTATGGGTAATCGTAAGAGGACGTTAATCACGTTGACTTTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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