SE2230332

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5055
  • Zea mays
  • SE2230332
  • hAT
  • Hat46
  • chr10:148274443-148274809
  • GCTATGCA
  • GCTATGCACAGCGGTGGACCGGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
   TAT  A   C     A  G    TTTC  G     - GGACAAATTTAAAATAGAGGTCCATCAAACTATTGTTATATAAAAATGGTACCAATATATAAATTCAAGACACATCTAAAAATATTCATACTAGGCAACAAATAAATAAAAAGATACATATTATAGTATTATCTTAAAAGTTCTTT
 GC   GC CAG GGTGG CC GAGG    AG GGCCC G                                                                                                                                                  
 ||   || ||| ||||| || ||||    || ||||| |                                                                                                                                                  T
 CG   CG GTC CCGCC GG CTCC    CC CCGCC C                                                                                                                                                  
A  TAT  -   A     G  A    --CA  -     T CCCGGCGGCGGGGCCCGGGGGTTAATATATCCCGGAGCTTGGATCAATATATAAGTCATTAATCTGATAGTCTGTGCTATCGAATTATCACTTTACAGCTTATTAATCGTCGGTGCTTTGCAAGTGTTGTACCAGCATGTGTACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3