SE2250336

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5059
  • Zea mays
  • SE2250336
  • PIF/harbinger
  • To78
  • chr10:99793669-99793866
  • TCA
  • AGGCCCTGTTTGGAACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC   C              ATAAAA    CAA       -    -      GTT        CCAAACA  C         ATCAC  G          CTACT
  AGG CCTGTTTGGAACCT      CTAA   TTAGCTA CTAA AAATTA   GTTGGGTT       GA TCAGCTAAT     AG TAATTGTTAG     
  ||| ||||||||||||||      ||||   ||||||| |||| ||||||   ||||||||       || |||||||||     || ||||||||||     T
  TCC GGACAAACTTTGGA      GATT   AATCGGT GATT TTTAAT   CGACCTAA       CT GGTCGATTA     TT ATTAACAATC     
AC   C              GATCTC    ATG       T    A      AAT        -------  C         ----C  G          AACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3