SE2250348

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5071
  • Zea mays
  • SE2250348
  • PIF/harbinger
  • To4
  • chr10:135326180-135326302
  • TAA
  • AGGGCTAGTTTGGGAACCACATTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 C  -A     CCAC        -CA      TAA       TAG
  AGGGCTAGTTTGGGAAC AC  TTTTC    GGGATTTT   TTTTCT   AGGAAAT   
  ||||||||||||||||| ||  |||||    ||||||||   ||||||   |||||||    
  TCCCGATCAAACCCTTG TG  AAAAG    CCCTAAAA   AAAAGA   TCTTTTA   
AA                 A  CA     -ATT        ATA      TTC       CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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