SE2250351

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5074
  • Zea mays
  • SE2250351
  • PIF/harbinger
  • To74
  • chr10:104848511-104848741
  • TAA
  • AGGAGGTGTTTGGAATGGCTCCAGGTTCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   AGG                  G      --------CTCT   --       -T     TTATAATATCAATCTAAA   TT     AATGTTTTTAATCTAAATAATAAATAAAATGAATTATCA
  AGG   TGTTTGGAATGGCTCCAG TTCCAG            AGT  GTGGAGC  GTAGT                  TAG  TTAAA                                       
  |||   |||||||||||||||||| ||||||            |||  |||||||  |||||                  |||  |||||                                       A
  TCC   ACAAACCTTGTCGGGGTC GAGGTC            TCA  CACCTCG  CATCA                  CGA  GGTTT                                       
AA   GGG                  -      CTTTAAACCACC   AC       TC     ------------------   --     TTTAGAACCTCGACCTCAATATTCGGAAATCTTCTGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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