SE2250362

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5085
  • Zea mays
  • SE2250362
  • PIF/harbinger
  • To53
  • chr10:6396406-6396689
  • TTA
  • AGAGCATCTCCAAGAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 -----------C     -   TGACCCACCAAGCTAAATTTTAGCTATTCAACAATAAAATAACTCTCTAACAGACTAGCTATCTGACTCGTCAAACTATTCAACTCTCCAAATTGGCTCCCTCACTAG
  AGAGCATCTCCAAGAGA            TAGCT AAA                                                                                                            
  |||||||||||||||||            ||||| |||                                                                                                             
  TCTCGTAGAGGTTCTCT            CTGAT GAT                                                                                                            
AT                 TAGAAGTAAAAA     A   AAACTGAGAGATAAATAGAAAAGTATGCATAATATGATATATACATCGTAGAAGTAAGATTGTCTAATAGATAGATCAAAGTGATCATTCCACCGATTGGTTTAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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