SE2250363

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5086
  • Zea mays
  • SE2250363
  • PIF/harbinger
  • To43
  • chr10:136881166-136881476
  • TAA
  • AGGGCATGTACAGTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ---------A - GACATCAAAACGGTTCTCCAAGCACAGGAGACAACTAAGAGACTCTATTGTACAATGGAGTGTCTATAAACGTAGTCTATTAATAAATACAGAATTAAATGTATTTGTATAGCATCAGATCGATAGAAC
  AGGGCATGTACAGTGG          G A                                                                                                                                 
  ||||||||||||||||          | |                                                                                                                                 A
  TCCCGTACATGTCACC          C T                                                                                                                                 
AA                ACAAATTACA C CAGAGAATTCCACAAATTCCCCCAATAAACGTTTTTTTAGAATCTCGGCAGAGAGGCACTTCTCTGCGGAGACCGAGCATTTGGTTCATCGTTGTCTGCGGAGTGAAGGGTGACATGCTTAAATAGCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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