Plant MITE

SE2250366

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5089
Zea mays
SE2250366
PIF/harbinger
To14
chr10:95344996-95345355
TAA
AGAGCAACTCCAATAGTTATGTAAA

Secondary structure and sequence

TSD TIR

5'

3'

TA            A     A G    TTTTA   C         CA      A A    G     TGGCTTTTAGAGTAAAAAAATGTGAGTTCTCCAATAGTTCTCTAAATATATGTTGTAATTTTGTTTTGTATTTATCCACATAAAAAATAAGTCACAAAAACTATATAATGCAGTCA
  AGAGCAACTCCA TAGTT T TAAA     GCT TCTAAATCA  GATTTA G AGTT CTAAA                                                                                                                    
  |||||||||||| ||||| | ||||     ||| |||||||||  |||||| | |||| |||||                                                                                                                     
  TCTCGTTGAGGT ATCAA A ATTT     TGA GGATTTAGT  TTAAAT C TCAA TTGTA                                                                                                                    
AA            C     G G    ---TC   A         TA      C A    -     CTTTTGATAAGAGGTTGTTAAGAGATTTACTTGAAAGATTTAAATTGTTGAACAGTAGATTGGAGTAAAAGAGAGATGTAAACTGTTGGTAAATTGTTGAGGGATTTGTTTTTACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250366

TAAGAGCAACTCCAATAGTTATGTAAATTTTAGCTCTCTAAATCACAGATTTAAGAAGTTGCTAAATGGCTTTTAGAGTAAAAAAATGTGAGTTCTCCAATAGTTCTCTAAATATATGTTGTAATTTTGTTTTGTATTTATCCACATAAAAAATAAGTCACAAAAACTATATAATGCAGTCAACATTTTTGTTTAGGGAGTTGTTAAATGGTTGTCAAATGTAGAGAGAAAATGAGGTTAGATGACAAGTTGTTAAATTTAGAAAGTTCATTTAGAGAATTGTTGGAGAATAGTTTTCATGTTAACTACCTAAATTATTGATTTAGGAAGTCTTTTAGAGAACTACTGGAGTTGCTCTAA

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