Plant MITE

SE2250369

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5092
Zea mays
SE2250369
PIF/harbinger
To91
chr10:120951922-120952071
TTA
CTATCTCCAATAGA

Secondary structure and sequence

TSD TIR

5'

3'

TTAGA              ---    --G AAAATAGGCGATACGGAACTGTAGATGACACTGTGATGATACTGTTT
     CTATCTCCAATAGA   GTGT   G                                               
     ||||||||||||||   ||||   |                                               A
     GATAGAGGTTGTCT   GTAT   G                                               
ATTCG              AGG    AGA CAAGGGATAGTGTAAGATATAAAGTTTGAAGAGAGATATTTGTAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250369

TTAGACTATCTCCAATAGAGTGTGGAAAATAGGCGATACGGAACTGTAGATGACACTGTGATGATACTGTTTAACAATGTTTATAGAGAGAAGTTTGAAATATAGAATGTGATAGGGAACGAGATATGGGATCTGTTGGAGATAGGCTTA

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