SE2230370

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5093
  • Zea mays
  • SE2230370
  • hAT
  • Hat8
  • chr10:125913890-125914289
  • CACGCCCG
  • GCCCGTAGGGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAC  CC         ---AAAA   ATATCCGAATTGTTAGAACTAACTTAATATTTTAAAATAGATATGTATAAAAATTTGATGCTGATCTTTTCTTATGTTATCAAGCACATTACTATAAATAAGAACAGTTTTTTGCATAAATCGTTTTATGCATTTACTCCCTACAACAAAAAAGGTAAAAAACTATCTGAATCTG
   GC  GTAGGGATG       TCG                                                                                                                                                                               
   ||  |||||||||       |||                                                                                                                                                                               T
   CG  CATCCCTAC       GAT                                                                                                                                                                               
GCC  CA         CTTTGCC   GAATAAATCTATAGTTAAAAAACCTGAATAAAAGAAACTAACGCTTATTTATCCTATATTTTAGATGATATGTTTAAGCATAAGAACAAAAATCGTAACTCGAACATTTCTAAGCATTTTCCATTTGAAGTTTAAATAGTATATAGAAGAGTTTACTATCTATATTTTAAGTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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