SE2250375

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5098
  • Zea mays
  • SE2250375
  • PIF/harbinger
  • To60
  • chr8:157382334-157382669
  • TTA
  • AGGTAGTGTTTGGTTGAGGAGCCAAGTAGAACGGAGCCGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                                          CATCCC  A      --------                     T   TGGTAATCTGGAACGGAGCGGTTCTGTTTTTTGTTTGGTTGCAGAGTGAACGGAACGGAGCGTGACTGTGAGAGCGGGATTGGA
  AGGTAGTGTTTGGTTGAGGAGCCAAGTAGAACGGAGCCGTTC      TG TTCTAG        GAACGGAGCCGCTCTGTTCTG GTT                                                                                    
  ||||||||||||||||||||||||||||||||||||||||||      || ||||||        ||||||||||||||||||||| |||                                                                                     
  TCCATCACAAACCAACTTCTCGGTTCATCTTGCCTTGGCAAG      AC AAGGTC        AACAAACCAATGTTTCATTGA TCT                                                                                    
AT                                          ------  -      AAAACAAC                     -   TGCCTTACCGAGGTTAATCCCTTATAAGAGGAGTCTAGGCCTTGGTAAGGCGAGGTTTTTTAGTTACCTTGCCTCGGCGAGGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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