Plant MITE

SE2220383

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5106
Zea mays
SE2220383
Mutator
M20
chr8:168915924-168916199
AAAAACTAA
GAGAACATATCTAATGCACATGGAAGATTGGTGCACATGGTGCACATATTAAATCATCACCACTCATTTTAGATCTAACGTCTCTAGTTGTTTGGTATATTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

AAAAACTAA   A        AA          A                                  C                  C           TT G  A  T     TAAG      C    A   GGTGG
         GAG ACATATCT  TGCACATGGA GATTGGTGCACATGGTGCACATATTAAATCATCA CACTCATTTTAGATCTAA GTCTCTAGTTG  T GT TA TTTGC    GACACC TCCA CGT     
         ||| ||||||||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||  | || || |||||    |||||| |||| |||     T
         CTC TGTATAGA  ACGTGTACCT CTAACCACGTGTACCACGTGTATAATTTAGTGGT GTGAGTAAAATTTAGATT CAGAGATCAAC  A TA GT AAATG    TTGTGG AGGT GTA     
AATCAAAAA   C        CC          C                                  A                  A           -T G  A  T     TTTA      A    G   ATGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220383

AAAAACTAAGAGAACATATCTAATGCACATGGAAGATTGGTGCACATGGTGCACATATTAAATCATCACCACTCATTTTAGATCTAACGTCTCTAGTTGTTTGGTATATTTTGCTAAGGACACCCTCCAACGTGGTGGTGTGTAATGGTGGAAGGTGTTATTTGTAAATTGAATGATCAACTAGAGACATTAGATTTAAAATGAGTGATGGTGATTTAATATGTGCACCATGTGCACCAATCCTCCATGTGCACCAGATATGTCCTCAAAAACTAA

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