SE2210389

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5112
  • Zea mays
  • SE2210389
  • Tc1/Mariner
  • St8
  • chr8:155972514-155972677
  • TA
  • TACTCCCTCCATCCCAAAATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
         CA           TAGTCA      CTCTTAATTTTTA     ------- TA    A TGCATGATGATGAACCTAGACACA
TACTCCCTC  TCCCAAAATAG      TTTTAG             TGTCT       A  TTCA A                        
|||||||||  |||||||||||      ||||||             |||||       |  |||| |                        T
ATGAGGGAG  AGGGTTTTATT      AAAATC             TATAT       G  TATG T                        
         AC           TTAAAC      -----------CC     CACCTAA --    - TATCAATTACATACACAAAATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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