SE2230394

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5117
  • Zea mays
  • SE2230394
  • hAT
  • Hat30
  • chr8:106747413-106747583
  • GGTATAAG
  • TATAAGCTTAGTAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
GG    AG          AG     CG    GATGGGATCGAGGAACGGGAACGTGGTACGCGGAACGCTACAAAAACTAGGATTT
  TATA  CTTAGTAACC  GTTCC  GATC                                                       
  ||||  ||||||||||  |||||  ||||                                                        
  ATAT  GAATCATTGG  CCTTG  CCTT                                                       
GA    GG          -C     AC    GAACCGGTGCAAGGAGCAAGGCCCTTGCACCCTTGTTAGAACAAGGTCATCACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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