SE2250396

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5119
  • Zea mays
  • SE2250396
  • PIF/harbinger
  • To46
  • chr8:125741170-125741305
  • TAA
  • AGGGCTAGTTTGGGAGCCTCAAACCCGGAGGGAATTAGAGGGGCTAAAATCCCTTCCTTATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -  TC            A   A                  C        AT
  AGGGCTAGTTTGGGAG CC  AAACCCGGAGGG ATT GAGGGGCTAAAATCCCTT CTTATTCA  
  |||||||||||||||| ||  |||||||||||| ||| |||||||||||||||||| ||||||||   
  TCCCGATCAAACCTTC GG  TTTGGGCCTCCC TAA CTCCCCGATTTTAGGGGA GAATAAGT  
AA                T  -T            C   C                  A        TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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