SE2230401

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5124
  • Zea mays
  • SE2230401
  • hAT
  • Hat18
  • chr8:75340960-75341507
  • GCTGCCTA
  • GCTGCCTATAGGGCTGGG

Secondary structure and sequence

TSD    TIR
5'



3'
     T  CTA     C    CAAAATACTC      CGTGAGCTCGCTCGACTCGTGGCTAGCTCGGTTCGGCTCGACTCGGCTCGTTTCAATTTTATCACGAGCTGAGCTAACATCTCAGCTCGGTTCGTTAACGAGCCAGCTCGACACGAGCTCGAGCCAGCTCGTTAGCTCGAATGAGCTAACATTTATCTGTAAAACAAAGCCTATATTTGTATTGGATGAATTAATAAGTGATGAACTATGTTAGTTTAGGGTTTAAATGATGTGATATATAAAA
   GC GC   TAGGG TGGG          GTGGCT                                                                                                                                                                                                                                                    
   || ||   ||||| ||||          ||||||                                                                                                                                                                                                                                                     
   CG CG   ATCCC ACCT          AGCTCG                                                                                                                                                                                                                                                    
ATC  T  ---     C    --------AT      GTCGAGCCGAGCCGAGCTGGCTCGAGCTCGACCGAGCAATTCCTTTGCTCGACCGAGCCGAGCCGAGCAATTCGTTGGCTCGGTCTCTTGGTCGAGCCGAGCCGAGCAAACGCTCGAGCTCGACCGAGCAAATCGAGCGCTCGGTCTTGTTTTTTATCATATGTACATATATATGTTGTTATATTAGTTAACGATCAATTAAAGTATGATTAAATTGTGATCTTTTCTGATTGTTATGAGTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End