SE2250402

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5125
  • Zea mays
  • SE2250402
  • PIF/harbinger
  • To46
  • chr8:171074393-171074527
  • TTA
  • AGGGCTAGTTTGGGAGACACAAAATCAGAGGGAATTGGAGGGGCTAAAATCTCCCCTTATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -A  C      A     AA       G        - T CC        AT
  AGGGCTAGTTTGGGAG  CA AAAATC GAGGG  TTGGAGG GCTAAAAT C C  CTTATTCA  
  ||||||||||||||||  || |||||| |||||  ||||||| |||||||| | |  ||||||||   
  TCCCGATCAAACCCTC  GT TTTTAG CTCCC  AATCTCC CGATTTTA G G  GAATAAGT  
AT                AG  -      C     CC       G        A C AA        TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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