Plant MITE

SE2210403

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5126
Zea mays
SE2210403
Tc1/Mariner
St8
chr8:18608311-18608474
TA
TACTCCCTCCGTCCCAAAATAGTATTTGTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

         C       A   GTA          ----------G    T    GATT     AATATTTGATGTATGTGTATTATATA
TACTCCCTC GTCCCAA ATA   TTTGTTTTAG           GTGT AATG    CATAC                          
||||||||| ||||||| |||   ||||||||||           |||| ||||    |||||                           
ATGAGGGAG CAGGGTT TAT   AAGTAAAATC           ACAC AGGT    TAAGT                          
         A       A   AAC          GAGAAATGAAA    -    ---A     TTATCTACTGTTACTTAGATCTGTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210403

TACTCCCTCCGTCCCAAAATAGTATTTGTTTTAGGGTGTTAATGGATTCATACAATATTTGATGTATGTGTATTATATATGTGTCTAGATTCATTGTCATCTATTTGAATATGGACACAAAAGTAAAGAGCTAAAATGAACAATATATTGGGACAGAGGGAGTA

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