SE2250407

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5130
  • Zea mays
  • SE2250407
  • PIF/harbinger
  • To54
  • chr8:132307289-132307422
  • TAA
  • AGGGGTTGTTTGGTTCGTGGCTAAATGTGCCACACTTTGCCTAAGGTTAGTCGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    G          -C        ATG                -------------        CG   GA
  AGGG TTGTTTGGTT  GTGGCTAA   TGCCACACTTTGCCTA             AGGTTAGT  TTC  
  |||| ||||||||||  ||||||||   ||||||||||||||||             ||||||||  |||  A
  TCCC GACAAACCAA  TACCGATT   ACGGTGTGAAACGGAT             TCCAATCA  AAG  
AA    G          AC        -GA                TGAAAAGACGGAT        AG   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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