SE2230411

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5134
  • Zea mays
  • SE2230411
  • hAT
  • Hat12
  • chr8:155566510-155567052
  • CCAGCTGG
  • CCAGCTGGTAGGGGTGGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
             G      -        --      AATTTTCGGGTCGGGTAATTCGGGTTTTAAAAATTTCGGGTTTTGAGAATCGATACCCGAAATTACAACGGGTTTTTCAATACCCGAAAATTCGGGTACCCGGAATTTCGGGTTCGGGTTCGGGTATTCCCGAACTACCCGAACTATTGTGTTGGCTTCATAAAAACACATACACCCTATTAAATTAGTATAAAAATATAGTTTGAATAATGATATACATGGACATATAAAACACA
CCAGCTGGTAGGG TGGGCG TTCGGGTT  ACCCGA                                                                                                                                                                                                                                            
||||||||||||| |||||| ||||||||  ||||||                                                                                                                                                                                                                                             
GGTCGACCATCCC ACCCGT TTTTGGGC  TGGGCT                                                                                                                                                                                                                                            
             G      T        AT      TTGGGCTTGGGCCTTATGGGCTTGGGCTTGGGCTTTATGGGCTTTGGGCTTAAAACAAACCCTTAAAGCCCATCGTTGAACGTTTTGGGCTTTAATAAAACCCATTAAGCCCATAGTGTTAGCCCATAGGCTTTATGGGCTTGAAAGTACACAGTACATGAGTACAGTACGAATTAATAATTAAACATGTAGATATTAATACACATTCACACGTATTGAACACTAACATCTAACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3