SE2250413

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5136
  • Zea mays
  • SE2250413
  • PIF/harbinger
  • To92
  • chr8:56455338-56455473
  • TAA
  • AGGGCTGGTTTGGTGACAAGGGAATTGGAGGGGGTCCATGGGGGAGAAAATTACTTGCTATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C          GAG             G GA    TA         CAAA
  AGGGCTGGTTTGGTGA AAGGGAATTG   GGGGTCCATGGGG A  AAAT  CTTGCTATT    
  |||||||||||||||| ||||||||||   ||||||||||||| |  ||||  |||||||||     
  TCCCGACCAAACTACT TTCCCTTAAC   CCCTAGGTACCCT T  TTTA  GAACGATAA    
AA                A          ATA             G AC    GG         ATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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