SE2220414

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5137
  • Zea mays
  • SE2220414
  • Mutator
  • M13
  • chr8:93496850-93497022
  • TGTTTGAAT
  • GTTTGAATGAGCCATTGGCAATTTTGCCATTATCATTTGTGGGCTTG

Secondary structure and sequence

TSD    TIR
5'



3'
T        -   CC   G  A           A   T  G   --     GCCAG         ----  AC CACAAATCATAGACACAG
 GTTTGAAT GAG  ATT GC ATTTTGCCATT TCA TT TGG  GCTTG     TATGCCATC    GG  C                  
 |||||||| |||  ||| || ||||||||||| ||| || |||  |||||     |||||||||    ||  |                   
 TAAGTTTG CTC  TAA CG TAAAACGGTGA AGT AA ACC  CGGAC     ATACGGTAG    CA  G                  
         T   TT   A  A           G   T  A   GA     -AATA         GACA  -- ATACTGACCACCCCGGCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End