SE2250428

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5151
  • Zea mays
  • SE2250428
  • PIF/harbinger
  • To4
  • chr8:139056047-139056169
  • TTA
  • AGGGCTAGTTTGGGAACCCCAAATTTTCAATAGTTTTTTATTTTTCCAAGAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 C    A       T  T   T          -A       TAG
  AGGGCTAGTTTGGGAAC CCAA TTTTCAA AG TTT TATTTTTCCA  GAAAAAT   
  ||||||||||||||||| |||| ||||||| || ||| ||||||||||  |||||||    
  TCCCGATCAAACCTTTG GGTT AAGGGTT TC AAA ATAAAAAGGT  CTTTTTA   
AT                 T    A       C  T   T          AC       CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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