SE2220436

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5159
  • Zea mays
  • SE2220436
  • Mutator
  • M25
  • chr8:16553425-16553594
  • ATGTTTTTT
  • TGAGAAAATTCCTGGTATGCCATCAGATTTTATACTCATTCCTTGTGTGCCACTGAGTGGCATATAAGTATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTTTTT  A AA       G         CA  TTT       A                 A  GG     -AA   T  TTTT
        TG G  AATTCCT GTATGCCAT  GA   TATACTC TTCCTTGTGTGCCACTG GT  CATAT   GTA AT    
        || |  ||||||| |||||||||  ||   ||||||| ||||||||||||||||| ||  |||||   ||| ||     
        AC C  TTAAGGG CATACGGTG  CT   ATATGAG AAGGAACATACGGTGAC CG  GTGTA   TAT TG    
TTTTTTGT  C GG       A         AC  TTT       C                 -  GG     CAG   C  TGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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