SE2250437

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5160
  • Zea mays
  • SE2250437
  • PIF/harbinger
  • To30
  • chr8:146892477-146892620
  • TTA
  • AGGCCTAGTTTAGGTACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT           A      CTAGTAATAAA   T         GA   AAATGTA      -  -   -T  G  TT
  AGGCCTAGTTT GGTACT           TGA ATTGGAGTG  TTG       TTGAGA GA GTA  TT AT  
  ||||||||||| ||||||           ||| |||||||||  |||       |||||| || |||  || ||  A
  TCCGGATCAAA CTATGA           ACT TAATCTCAC  AAC       AATTCT CT CAT  AG TG  
AT           C      ----------A   C         AA   CTCCCTA      A  A   TT  G  TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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