SE2230446

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5169
  • Zea mays
  • SE2230446
  • hAT
  • Hat17
  • chr9:33049117-33049290
  • CGTGCGTG
  • GCGTGTAGGGGTGGTAATGGATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CGT          G         ATT  GATCCAAAT    CTTCACAATTTATTAAGGCCCTAAATTATTTTTAGTTCAAAAATGAATAGA
   GCGTGTAGGG TGGTAATGG   GC         GCCT                                                   
   |||||||||| |||||||||   ||         ||||                                                   A
   CGTGCATCCC ACTGTTACC   CG         AGTT                                                   
GTG          G         ---  --------A    TAAAATGTGATATTTTGAATTCCTAGCTTAGCCTAATCCTAGCCCGAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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