SE2210453

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5176
  • Zea mays
  • SE2210453
  • Tc1/Mariner
  • St10
  • chr9:40517616-40517778
  • TA
  • TACTCCCTCCGTACTAAAATATAGTTTTTTCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
            A              T  C   CCATCTTTTTT   --TCC         C  A    -A        AGACATAC
TACTCCCTCCGT CTAAAATATAGTTT TT TAG           CTG     ACATTCATT GA TGAT  ATAAATAT        
|||||||||||| |||||||||||||| || |||           |||     ||||||||| || ||||  ||||||||        A
ATGAGGGAGGCA GGTTTTATATTAAG AA ATC           GAT     TGTAAGTAA TT ATTG  TATTTATA        
            G              C  A   ----------C   TTATA         -  A    AA        ACAAACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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