Plant MITE

SE2220456

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5179
Zea mays
SE2220456
Mutator
M20
chr9:27017015-27017288
ATAAGAAAA
GAGAACATATCTAATGCACATGGAAGATTGGTGCACATGATGCACATATTAAATCATCACCACTCATTTTAGATCTAACGTCTCTAGTTGTTTGGTATATTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

ATAAGAAAA   A        AA          A              A                        C                         TT G  A  T     TAAG      C    A  -  GTG
         GAG ACATATCT  TGCACATGGA GATTGGTGCACATG TGCACATATTAAATCATCACCACT ATTTTAGATCTAACGTCTCTAGTTG  T GT TA TTTGC    GACACC TCCA CG TG   
         ||| ||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||  | || || |||||    |||||| |||| || ||    
         CTC TGTATAGA  ACGTGTACCT CTAACCACGTGTAC ACGTGTATAATTTAGTGGTGGTGA TAAAATTTAGATTGCGGAGATTAAC  A TA GT AAATG    TTGTGG AGGT GT AT   
AAAAGAATA   C        CC          C              C                        A                         -T G  A  T     TTTA      A    G  G  GTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220456

ATAAGAAAAGAGAACATATCTAATGCACATGGAAGATTGGTGCACATGATGCACATATTAAATCATCACCACTCATTTTAGATCTAACGTCTCTAGTTGTTTGGTATATTTTGCTAAGGACACCCTCCAACGTGGTGGTGTAGTGGTGGAAGGTGTTATTTGTAAATTGAATGATCAATTAGAGGCGTTAGATTTAAAATAAGTGGTGGTGATTTAATATGTGCACCATGTGCACCAATCCTCCATGTGCACCAGATATGTCCTCATAAGAAAA

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