SE2230458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5181
  • Zea mays
  • SE2230458
  • hAT
  • Hat2
  • chr9:149910322-149910865
  • GACACGAG
  • GAGTAGAGATGGCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GACAC AG   A               -   AA  CCGAATACCCGACGGGTTTTCCCCGATATGAAGGCGGGTACGGGATGATTTCTCTACCCGCGGGTATGTTAATGGGTAAAAAACTCTACCCGTTGGGTAGACGGGTACGGATATGGGTTGGTACGTCTATCCGTGGGTAAAATATACCCGCATCAATAACACTATAAACATCTAATAGAGTCCAACTTAGCTAGAATAAAATCCTTCTCTAGTTATCATTTATCTAGATACCAAGTTA
     G  TAG GATGGCAATGGGTAC CCG  AC                                                                                                                                                                                                                                              
     |  ||| ||||||||||||||| |||  ||                                                                                                                                                                                                                                              T
     C  ATC CTACCGTTGCCCATG ATG  GG                                                                                                                                                                                                                                              
GAGCA AG   C               T   --  CAGCCCATCATGGTAAGATATGGGCATGGGTAGTTTTTTTTTAGATGGGCAGTCCAATGGGTATATACGAGCGCCCATATTTTAGAATGGGTATGGGCATAGGCGCGCCCATAAAAATGGGTAGCCCATTGGGCATGGGCGAGCCTTTCTTAATTTAAGGTTATATGGTTAGTGAGTTTTATAATTTATTTGTATATTTTTGTTGAAGTTAAAGTGTATATTGTTTAGTATACTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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