Plant MITE

SE2250460

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5183
Zea mays
SE2250460
PIF/harbinger
To72
chr9:131098612-131098809
CTG
GGGTGCTGTTTGGTTCA

Secondary structure and sequence

TSD TIR

5'

3'

CT                 -AAAAA       CAA  G  AAT     - G TTTACGCTCGATTACTGACGGTAACAAATTTGAATAGGCTGGTATCAAATTT
  GGGTGCTGTTTGGTTCA      TGTAACG   AT GT   GGTAA T G                                                    
  |||||||||||||||||      |||||||   || ||   ||||| | |                                                     
  CCCACGGCAAACCAAGT      ACATTGC   AT TA   CCCAT G A                                                    
GT                 GCATAA       ---  -  ---     T - CTAGTGCAATTTAGTACAAACAAATCAGGTTGGCATTAGTCTATGGTGTGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250460

CTGGGTGCTGTTTGGTTCAAAAAATGTAACGCAAATGGTAATGGTAATGGTTTACGCTCGATTACTGACGGTAACAAATTTGAATAGGCTGGTATCAAATTTTAGTGTGGTATCTGATTACGGTTGGACTAAACAAACATGATTTAACGTGATCAGTTACCCATTACGTTACAAATACGTGAACCAAACGGCACCCTG

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