Plant MITE

SE2220461

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5184
Zea mays
SE2220461
Mutator
M11
chr9:137756035-137756290
TTGTAACCT
GTAACCTGGGAAAATATCTTATGCAATCACTTATATTGGTGCAAGCGTGCAATCAAGCGGTTTGGTGCATCTAATTTAGATCTAATG

Secondary structure and sequence

TSD TIR

5'

3'

TT  A  CT -   AA       A             A                       G      T    C                ATG    TTATTTTATATTTAACCCCTTCCACCTAAAACA
  GT AC  G GGA  ATATCTT TGCAATCACTTAT TTGGTGCAAGCGTGCAATCAAGC GTTTGG GCAT TAATTTAGATCTAATG   ACTG                                 
  || ||  | |||  ||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||   ||||                                  
  CA TG  C CCT  TATAGGA ACGTTAGTGAGTA AACCACGTTCGCACGTTAGTTTG TAGGTC CGTA GTTAGATCTAGGTTGC   AAAG                                 
TC  A  TT T   -G       C             A                       A      T    T                --C    TATACTTTCCCCAATTTTCATTTTATCCATGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220461

TTGTAACCTGGGAAAATATCTTATGCAATCACTTATATTGGTGCAAGCGTGCAATCAAGCGGTTTGGTGCATCTAATTTAGATCTAATGATGACTGTTATTTTATATTTAACCCCTTCCACCTAAAACATAGTACCTATTTTACTTTTAACCCCTTTCATATGAAACCGTTGGATCTAGATTGTATGCTCTGGATAGTTTGATTGCACGCTTGCACCAAAATGAGTGATTGCACAGGATATGTCCTCTTGTAACCT

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