Plant MITE

SE2220465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5188
Zea mays
SE2220465
Mutator
M14
chr9:19985276-19985539
TTTTAACAT
GGGAATGTATCTGTTGCAAACCAACTACTCTATGCAACCATGCAAACTTCTAATCTGAAACATATAATGTTGATCTAAGGGACCTGCGGAGGAGTGTGAGGAAAGATTT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTAACAT             T          -  A    A       A                G AA     A   T             CT    A  A     A  AAA     GAAAAAG    A     AGCG
         GGGAATGTATCTG TGCAAACCAA CT CTCT TGCAACC TGCAAACTTCTAATCT A  CATAT ATG TGATCTAAGGGAC  GCGG GG GTGTG GG   GATTT       TGTG TTAGC    
         ||||||||||||| |||||||||| || |||| ||||||| |||||||||||||||| |  ||||| ||| |||||||||||||  |||| || ||||| ||   |||||       |||| |||||     
         CCCTTGCATAGAC ACGTTTGGTT GA GAGA ACGTTGG ATGTTTGAAGATTAGA T  GTGTA TAT ACTAGATTCCCTG  CGTC CC CGCAC CT   TTAAA       ATAT AATTG    
TACAATTTT             C          A  -    C       C                G TG     C   C             --    -  -     -  --A     -------    G     GCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220465

TTTTAACATGGGAATGTATCTGTTGCAAACCAACTACTCTATGCAACCATGCAAACTTCTAATCTGAAACATATAATGTTGATCTAAGGGACCTGCGGAGGAGTGTGAGGAAAGATTTGAAAAAGTGTGATTAGCAGCGGGCGGTTAAGTATAAAATTATCCACGCCCCTGCGTCCCTTAGATCACTATCATGTGGTTGAGATTAGAAGTTTGTACGGTTGCACAGAGAGATTGGTTTGCACCAGATACGTTCCCTTTTAACAT

Copy Cancel