Plant MITE

SE2220469

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5192
Zea mays
SE2220469
Mutator
M4
chr9:125058126-125058377
ATTGGCTAT
TGGCTATGGGAACGTATCTGGTGCTCAAAGGGGTACGGTGCTCATGTACACATTTTAAATCTGGTGCATCCATCTTGCATTCAACGACACCAGCAATTTTACGAAGAACCCCTCCCACC

Secondary structure and sequence

TSD TIR

5'

3'

AT      -                                         A                         C       C    A  C  G       AC           C     AGGGG
  TGGCTA TGGGAACGTATCTGGTGCTCAAAGGGGTACGGTGCTCATGT CACATTTTAAATCTGGTGCATCCAT TTGCATT AACG CA CA CAATTTT  GAAGAACCCCT CCACC     
  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| || || |||||||  ||||||||||| |||||      
  ATCGGT ACCCTTGCATAGACCACGAGTTTCCCCATGCCACGAGTACA GTGTAAAATTTAGACCACGTAGGTA AGCGTAG TTGT GT GT GTTAAAA  CTTCTTGGGGA GGTGG     
 T      T                                         C                         A       A    C  C  G       CA           A     AAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220469

ATTGGCTATGGGAACGTATCTGGTGCTCAAAGGGGTACGGTGCTCATGTACACATTTTAAATCTGGTGCATCCATCTTGCATTCAACGACACCAGCAATTTTACGAAGAACCCCTCCCACCAGGGGAGGAAGGTGGAAGGGGTTCTTCACAAAATTGGTGCTGCTGTTAGATGCGAAATGGATGCACCAGATTTAAAATGTGCACATGAGCACCGTACCCCTTTGAGCACCAGATACGTTCCCATTGGCTAT

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