Plant MITE

SE2220472

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5195
Zea mays
SE2220472
Mutator
M25
chr9:133098271-133098440
TTAGTTATA
AGGGCCAATTCCCTGTATGCCACTGGAAAATATACTCATCCCTTGTATGTCACTAG

Secondary structure and sequence

TSD TIR

5'

3'

TTAGTTAT    CC      CT        C    AAA                A       -  CCCCACA  T    GACACCAAAA
        AGGG  AATTCC  GTATGCCA TGGA   TATACTCATCCCTTGT TGTCACT AG       TG CATA          
        ||||  ||||||  |||||||| ||||   |||||||||||||||| ||||||| ||       || ||||           
        TCTC  TTAAGG  CATACGGT GTCT   ATATGAGTAGGGAACA ACGGTGA TC       AC GTAT          
ATATTGAT    TT      AC        A    AAA                C       C  -------  C    ATCCATATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220472

TTAGTTATAGGGCCAATTCCCTGTATGCCACTGGAAAATATACTCATCCCTTGTATGTCACTAGCCCCACATGTCATAGACACCAAAAATTATACCTATATGCCACTCAGTGGCACACAAGGGATGAGTATAAAATCTGATGGCATACCAGGAATTTTCTCTTAGTTATA

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