Plant MITE

SE2230475

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5198
Zea mays
SE2230475
hAT
Hat43
chr9:51142727-51142900
GCTCTACC
CTAGGGGTGGTAATGGGCTCTAGATT

Secondary structure and sequence

TSD TIR

5'

3'

GCTCTAC                 C  TA    TTACACTACAA    -  A GA  ---  ATCGGATTAGGATCGAGCCCTATTCCTATTCATT
       CTAGGGGTGGTAATGGG TC  GATT           ATTT TA G  TC   AA                                  
       ||||||||||||||||| ||  ||||           |||| || |  ||   ||                                  T
       GATCCCCACCATTACTT AG  CTAG           GTTT CG G  GG   TG                                  
CCATCTC                 -  TG    -----------    A  - --  AAG  TTTTTCAATCCCGAGAATTTAATAAAATCAAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230475

GCTCTACCTAGGGGTGGTAATGGGCTCTAGATTTTACACTACAAATTTTAAGGATCAAATCGGATTAGGATCGAGCCCTATTCCTATTCATTTTTGAACTAAAATAATTTAAGAGCCCTAACTTTTTGTGAAGGGGCATTTGGATCGTGATTCATTACCACCCCTAGCTCTACC

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