Plant MITE

SE2210477

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5200
Zea mays
SE2210477
Tc1/Mariner
St8
chr9:135151931-135152092
TA
TACTCCCTCCGTCCTAAAATATTAGTCGTTTTAGCTCTTGATTT

Secondary structure and sequence

TSD TIR

5'

3'

                     TT GTC      G  -----C       TTA     ATGTTCAAATGGATGATAATGAATCTAA
TACTCCCTCCGTCCTAAAATA  A   GTTTTA CT      TTGATTT   TGTTT                            
|||||||||||||||||||||  |   |||||| ||      |||||||   |||||                             
ATGAGGGAGGCAGGGTTTTAT  T   CAAAAT GA      AACTAAG   TATGT                            
                     TT AAA      G  AAAATC       ---     TATTAATTACATAGACAAAATATACAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210477

TACTCCCTCCGTCCTAAAATATTAGTCGTTTTAGCTCTTGATTTTTATGTTTATGTTCAAATGGATGATAATGAATCTAAAAACATATAAAACAGATACATTAATTATTGTATGAATCAACTAAAAAGGTAAAACAAATTTTATTTTGGGACGGAGGGAGTA

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