Plant MITE

SE2020003

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5205
Medicago truncatula
SE2020003
Mutator
M4
MtChr5:2741832-2742142
AAATATAAA
GGGTTAATAGGTCTTTAACCTCCTGTAATATAGATCATTTTCGGTTTTTCCCCTGTAAAATATATTTTTTTTATTTACCCCCTGTAAAATTTTATTGTTTTGATTTAACCCCCTAATAGGCCAAATAAAAACGAA

Secondary structure and sequence

TSD TIR

5'

3'

AAATATAAA                 A               A                C            AT      T         -C                         A                        G  AATTTCTTAAAA
         GGGTTAATAGGTCTTTA CCTCCTGTAATATAG TCATTTTCGGTTTTTC CCTGTAAAATAT  TTTTTT ATTTACCCC  TGTAAAATTTTATTGTTTTGATTTA CCCCCTAATAGGCCAAATAAAAAC AA            
         ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||  |||||| |||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||            A
         CCCAATTATCCAGAAAT GGAGGACATTATATC AGTAAAGGCTAAAGGG GGATATTTTATA  AAAAAA TAAATGGGG  ATATTTTAAAATAACAAAACTAAAT GGGGGATTATCCGGTTTGTTTTTG TT            
AAATATAAA                 -               C                A            --      C         AA                         G                        G  AAAACAAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020003

AAATATAAAGGGTTAATAGGTCTTTAACCTCCTGTAATATAGATCATTTTCGGTTTTTCCCCTGTAAAATATATTTTTTTTATTTACCCCCTGTAAAATTTTATTGTTTTGATTTAACCCCCTAATAGGCCAAATAAAAACGAAAATTTCTTAAAAAAAAAAAACAAAATTGGTTTTTGTTTGGCCTATTAGGGGGGTAAATCAAAACAATAAAATTTTATAAAGGGGTAAATCAAAAAAATATTTTATAGGAGGGAAATCGGAAATGACCTATATTACAGGAGGTAAAGACCTATTAACCCAAATATAAA

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