SE2020005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5207
  • Medicago truncatula
  • SE2020005
  • Mutator
  • M5
  • AC233660:121433-121741
  • TTTGTTTTT
  • GGGAGATTAGTCACTTTAATCCCTGAATAGGAAATGAGTCGTCACTTTAGTCCCTGAATGCAGATAAATTGCAAAATAGTCCATGAATGTAGACTTTGTTAGTCAATTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGTTTTT   A              A    T    A     -T    C                                          A           -      A        -  TCCCT     CAGACTCCGTTCGTCAATTTAGTCC
         GGG GATTAGTCACTTTA TCCC GAAT GGAAA  GAGT GTCACTTTAGTCCCTGAATGCAGATAAATTGCAAAATAGTCC TGAATGTAGAC TTTGTT GTCAATTT AG     GAATG                         
         ||| |||||||||||||| |||| |||| |||||  |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||     |||||                          
         CCC TTAATCAGTGAAAT AGGG CTTA CCTTT  TTCA CAGTGAAATTAGGGACTTACGTCTGTTTAACGTTTTGTCAGG ACTTACATCTG AGACAA CAGTTAAA TC     TGATT                         
TTTTTGTTT   C              C    T    -     TT    T                                          G           G      C        A  ---CC     TCACTAATCGCCTCAGATGTAAGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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