SE2020011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5213
  • Medicago truncatula
  • SE2020011
  • Mutator
  • M8
  • MtChr4:16290805-16291107
  • TATTTTATA
  • ATAGGGTTAATTAAGTAAATGGTCCTTGTAAATATTCAGAATTTTGTTTTTAATCCCTACAAAATAAAATCACACTTTTTAGTCCCTATAAAATTTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTT                AAA                   GAA           A      C                             AAA       ATCA   TTTTTTGTCCCTATAAAATTTTCCATCAGCATTTTTAGTC
      ATAGGGTTAATTAAGT   TGGTCCTTGTAAATATTCA   TTTTGTTTTTA TCCCTA AAAATAAAATCACACTTTTTAGTCCCTAT   ATTTTCC    ACA                                        
      ||||||||||||||||   |||||||||||||||||||   ||||||||||| |||||| |||||||||||||||||||||||||||||   |||||||    |||                                         
      TATCCCAATTAATTCA   ATTAGGGATATTTATAAGT   AAAATAAAAAT AGGGAT TTTTATTTTAGTGTGAAAAATCAGGGATA   TAAAAGG    TCG                                        
ATATTT                AAA                   ATC           C      A                             CTG       -AAT   TAAAATCCCTAATTTTTACGACTACCTTTTTAAAATATCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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