Plant MITE

SE2020016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5218
Medicago truncatula
SE2020016
Mutator
M11
AC233685:247202-247388
TCCAAAAGG
AAAGGGTCTTGTTACAAGTGTCCCCGGGACACTCTTTAAGCATTCCAAAATTAGTAATTATTTTTTAAAAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

TCCA      TCT     -          C               C   CC  AAT     AT     TT         TAAA   -T     TTCC
    AAAGGG   TGTTA CAAGTGTCCC GGGACACTCTTTAAG ATT  AA   TAGTA  TATTT  TAAAAAAGT    TGT  TCGAT    
    ||||||   ||||| |||||||||| ||||||||||||||| |||  ||   |||||  |||||  |||||||||    |||  |||||    A
    TTTCCC   ACAAT GTTCACAGGG CTCTGTGAGAAATTC TGA  TT   ATCAT  ATAAA  ATTTTTTCA    ACA  AGTTA    
AACC      TTT     T          A               C   TA  --C     AC     -T         ---C   TT     CGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020016

TCCAAAAGGGTCTTGTTACAAGTGTCCCCGGGACACTCTTTAAGCATTCCAAAATTAGTAATTATTTTTTAAAAAAGTTAAATGTTTCGATTTCCAATGCATTGATTACACACTTTTTTATAAATACATACTACTTATAGTCCTTAAAGAGTGTCTCAGGGACACTTGTTAACATTTCCCTTTCCAA

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