SE2020032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5234
  • Medicago truncatula
  • SE2020032
  • Mutator
  • M15
  • MtChr4:35243801-35244216
  • TTTTTTTTA
  • AGGCTTATTGATGTGTTTAGCCCTTGCAATTAGGCGGCATTTAAAAATTCGTCCCTGTAATTGCTAATCCTGGCATTTTAACCCTGCAATTGTTAATCATTTAAAATTTCGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTT   C                                                                                              A          C    CTCTCC   -C              GC     GAAATTCCAAATTTACCCCTGGGTTTCCAATTCTTTCTTCAATATTTTGTCCTCTT
        AGG TTATTGATGTGTTTAGCCCTTGCAATTAGGCGGCATTTAAAAATTCGTCCCTGTAATTGCTAATCCTGGCATTTTAACCCTGCAATTGTTAATC TTTAAAATTT GTCC      CCA  TTAATCACTGCCAC  CACAT                                                        
        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||      |||  ||||||||||||||  |||||                                                         
        TCC AATAACTACACAAATTGGGAACGTTAATCCGCCGTAAATTTTTAAGCAGGGACATTAACGATTAGGACCGTAAAATTGGGACGTTAACAATTAG AAATTTTAAA CAGG      GGT  AATTAGTGACGGTG  CAGTG                                                        
ATTTTTTT   A                                                                                              C          C    -AACCT   TT              --     ATTAAACTACTGCACCGTTAGTGACAATGTGTACTTTAAGGTTAAAACGGGAATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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