Plant MITE

SE2050042

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5244
Medicago truncatula
SE2050042
PIF/harbinger
To4
MtChr4:23353638-23353868
TTG
GGGGCCTGTTTGGATTGGCTTATTTTTGAGCTTATGCAAAAACAATTTATGCAAATAAATAAGCTTTTATGTATTATTCATAAGCTTGCTA

Secondary structure and sequence

TSD TIR

5'

3'

TT                           --GAG      C     CAA            A              ATT         --           A    ATGAAAAAGCAGC
  GGGGCCTGTTTGGATTGGCTTATTTTT     CTTATG AAAAA   TTTATGCAAATA ATAAGCTTTTATGT   ATTCATAAG  CTTGCTAAGGT GTTT             
  |||||||||||||||||||||||||||     |||||| |||||   |||||||||||| ||||||||||||||   |||||||||  ||||||||||| ||||              
  TCCCGGGTAAACCTAACCGAATGAAAA     GAATAC TTTTT   GAATACGTTTAT TATTCGAAAATACA   TAAGTATTC  GAGTGATTGTT TTTA             
GT                           AAATA      -     ATC            A              -AT         AA           -    ACATAGAAGTATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050042

TTGGGGCCTGTTTGGATTGGCTTATTTTTGAGCTTATGCAAAAACAATTTATGCAAATAAATAAGCTTTTATGTATTATTCATAAGCTTGCTAAGGTAGTTTATGAAAAAGCAGCTTATGAAGATACAATTTTTGTTAGTGAGAACTTATGAATTAACATAAAAGCTTATATATTTGCATAAGCTATTTTTCATAAGATAAAAAAAGTAAGCCAATCCAAATGGGCCCTTG

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