SE2030043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5245
  • Medicago truncatula
  • SE2030043
  • hAT
  • Hat6
  • MtChr3:40219204-40219885
  • CTCATCCC
  • TAGAGCTGTCAAAAATGGGCCCGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCATCCC     C      AA       C     AT  G        TTGACCCATATTTTTGGGCCGGGCCTAAAAAACTAACCAAAAATGCACTCGGGAATTTTCGGCCCAAGCCCATTTGGGCCATACAAAAGTTGGGCCGGGCCGGGCTGGCCCACCGGACTTTGGGCCGGCCCATTAGCCCATACTTCATTTTATTTTTGTTAAAAAACAACATATTTTTTAAAAAAATTATCAATTAATTTAAAATTTATTAACAAAAAAATATTTAAATAAATAAACTTAATAAATATGGATGAATCTAGCTTACAATTTTAAAATTTTAAAGTTTATAAATTATT
        TAGAG TGTCAA  ATGGGCC GGCTC  GG CCGGCCCA                                                                                                                                                                                                                                                                                                        
        ||||| ||||||  ||||||| |||||  || ||||||||                                                                                                                                                                                                                                                                                                         
        ATCTC ACAGTT  TACCCGG CCGGG  CC GGGTCGGG                                                                                                                                                                                                                                                                                                        
CCCTACTC     C      --       -     --  -        CCGAGTCCGGGCTCTGCGGGCTTATATCTTTACCCGGTCGGGCGGGGCCGGGCAAATACTAACCCGGAACTTAAGATATCGGGCTGGGCCGGGCCCACCCGGTCGGGCCGGACCGGGCAAGTACAAAATAAAATTTTTAAATAAGTGAAAAAAAAATACATAAAAGAATACATAATCAATGAGTGGTAATAAAAAAACGATTTTATACTAACCTACCTGTATTTTTATATTTATTAAAAATGTAATTGTAACTTATTATTAATTTGAGATCTAATAAGAAAGTTAATTTAGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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