SE2020045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5247
  • Medicago truncatula
  • SE2020045
  • Mutator
  • M19
  • MtChr4:23247792-23248310
  • TAAAAAAAA
  • AGGGTTAAATATGTTTTTGATCCCTATAAATATGTCAACTTTTCGTTTTAGTCCCTCTAAAATTTTCCTTCAATATTTAGTCCCTATAAAATTTTCAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAAAAAAA                   A                                              C       A                         ACTAA        C  AA      TTTAATTTTT     T TTGATGAAATTATGCAGAAATGTGTAAAATATTCTAAAAAAATTTCCTTTAGAAAATTAGAATTTTTTAACAAAACACAAATTAAATATGAATTTTTAACCGTAAAAAATATAA
         AGGGTTAAATATGTTTTTG TCCCTATAAATATGTCAACTTTTCGTTTTAGTCCCTCTAAAATTTT CTTCAAT TTTAGTCCCTATAAAATTTTCAATC     TTTTGGTC CT  TTTTAA          GTATT T                                                                                                                  
         ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||     |||||||| ||  ||||||          ||||| |                                                                                                                  A
         TCCCAATTTATACAAAAAC AGGGATATTTATATAGTTGAAAAGCAAAATCAGGGAGATTTTAAAA GAAGTTA AAATCAGGGATATTTTAAAAGTTAG     AAAACCAG GA  GAAATT          TTTGA G                                                                                                                  
AAAAAAAAA                   C                                              A       A                         AAGTG        A  -G      -------TCA     - TATACATCTTAAGTATAATAAATTATTTTGAAAGGTCTTTTTAAGTTTTATAATATTCTTAGTGAGGTTTTTTTTAAGTTTAAAAAAATTGCTTTGTACTTAAATTATACTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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