SE2020050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5252
  • Medicago truncatula
  • SE2020050
  • Mutator
  • M22
  • MtChr4:9857140-9857352
  • TTTATTTCA
  • AGAGAAAGTCTTGGTTGGGCACATACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTTC             G         T     CCAACACCTCA    -T      ATACTC      AACTAAC         T     --GT   -    CAC   AA
        AGAGAAAGTCTTG TTGGGCACA ACCCA           ATTT  AGGCAC      ACATAA       AAAATTAAA AAAAA    ATT TAAT   ATC  
        ||||||||||||| ||||||||| |||||           ||||  ||||||      ||||||       ||||||||| |||||    ||| ||||   |||   
        TCTCTTTCAGAAC AACTCGTGT TGGGT           TAAA  TCTGTG      TGTATT       TTTTAATTT TTTTT    TAA ATTA   TAG  
  TTTATT             G         T     --TTACTTTTA    CT      ------      CGTTCTT         C     ATTT   T    -TA   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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