SE2020063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5265
  • Medicago truncatula
  • SE2020063
  • Mutator
  • M28
  • MtChr5:34099940-34100308
  • ATAATTATT
  • ATAATTATTGGTTTAATTGCACTTTCCCCCCTATCTTTTGCTAATTGTGCGATTTTACACCCCATCTTTTTTTTGAGCGATTTTGCACCCCATCTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
         T                CC                      C      A                                         TGCCCCCTTTCTGATTTTCCACCCCATCTT  -   TT  ---  -  ---------  TT TGCCCCTTATCTTTTTGCTAATTGTGCGATTTTGCAC
 ATAATTAT GGTTTAATTGCACTTT  CCCCTATCTTTTGCTAATTGTG GATTTT CACCCCATCTTTTTTTTGAGCGATTTTGCACCCCATCTTTT                              TG TGT  AA   TT GC         AC  T                                     
 |||||||| ||||||||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||                              || |||  ||   || ||         ||  |                                     A
 TATTAATA CCGAATTAACGTGAAA  GGGGATAGAAAACGATTAACAC CTAAAA GTGGGGTAGAAAAAAAACTCGCTAAAACGTGGGGTAGAAAA                              AG AGT  AA   TC CT         GA  T                                     
T        -                AA                      A      C                                         --------CAGTTAACACAAAACAAGTTTT  T   --  TTT  T  CCTTTTCCC  -- TTCTATCCCACGTTTTAGCGATTTTTTTACTTCTCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End