SE2050064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5266
  • Medicago truncatula
  • SE2050064
  • PIF/harbinger
  • To4
  • MtChr1:4227940-4228166
  • TTA
  • AGGGCCGTTTGGATTGGCTTATTTTTTAGCTTTTGCAAAATAGCTTGTGCAAATAAATAAGCTTTTATGTATTATTCATAAGCTTGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      -                       C  T  C   A                              ATT         C  G   ---    A    ATGAAAAAACAAC
  AGGGCC GTTTGGATTGGCTTATTTTTTAG TT TG AAA TAGCTTGTGCAAATAAATAAGCTTTTATGT   ATTCATAAG TT TCA   AGGT GTTT             
  |||||| ||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||   ||||||||| || |||   |||| ||||              
  TCCCGG CAAACCTAACCGAATAAAAAATC AA AC TTT ATCGAATACGTTTATTTATTTGAAAATATA   TAAGTATTC AA AGT   TGCT TTTA             
AT      G                       A  T  T   C                              -AT         -  G   GAT    -    TCATAGAAGTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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